Installation

System requirement

• Python 3.7.3
• community-simulator
• Scipy, Numpy, Pandas, Matplotlib, functools, itertools, random. CVXPY is not required for our simulations as batch-culture simulations do not use the steadystate method in community-simulator.

Ecoprospector package depends on [community-simulator](https://github.com/Emergent-Behaviors-in-Biology/community-simulator) (developed by the Mehta group and described in their [paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0230430)), which depends on Numpy, Pandas, Matplotlib, SciPy that are all included in Anaconda distribution.

Install the development version

Clone the github repository to a local directory

$ git clone https://github.com/Chang-Yu-Chang/ecoprospector .

Then browse to the Ecoprospector directory and install package

$ pip install -e .