User Tools¶

Main functions in ecoprospector

Make parameters¶

make_assumptions(input_csv, row_number)

input_csv¶

Type:	DataFrame
Default:	`input_csv`

mapping csv file

row_number¶

Type:	integer
Default:	`0`

The row number that specifies the experiment to run (0-indexed)

params, params_simulation , params_algorithm, plate = prepare_experiment(assumptions)

assumptions¶

Type:	List
Default:	`assumptions`

A comprehensive list read from the input csv file

simulate_community(params = params, params_simulation = params_simulation, params_algorithm = params_algorithm, plate = plate)

params¶

Type:	List
Default:	`assumptions`

A comprehensive list read from the input csv file

params_simulation¶

Type:	List
Default:	`params_simulation`

Parameters related to simulating batch culture

params_algorithm¶

Type:	List
Default:	`params_algorithm`

Parameters related to protocol, community function, selection matrices, and

plate¶

Type:	Metacommunity object
Default:	`plate`

Object defined in this project