Index

A

assumptions configuration value

B

binary_threshold configuration value bottleneck configuration value

bottleneck_size configuration value

C

c0 configuration value c1 configuration value coalescence configuration value composition_lograte configuration value configuration value R0_food assumptions binary_threshold bottleneck bottleneck_size c0 c1 coalescence composition_lograte cost_distribution cost_lower cost_mean cost_sd cost_upper dilution directed_selection exp_id f_coalescence food fs function_lograte fw g g0 input_csv invader_index invader_sampling invader_strength knock_in knock_in_threshold knock_out l lognormal_mean lognormal_sd m metacommunity_sampling migration monoculture muc n n_inoc n_migration n_propagation n_transfer n_transfer_selection n_wells nreg output_dir overwrite_plate params params_algorithm params_simulation passage_overwrite_plate phi_distribution phi_lower phi_mean phi_sd phi_upper plate power_alpha protocol q r r_percent r_type regulation resource_shift response rf rich_medium rn row_number ruggedness s_gen s_migration sampling save_composition save_function save_plate scale seed selected_function sf sigc sigma_max sn sparsity supply target_resource tau w

cost_distribution configuration value cost_lower configuration value cost_mean configuration value cost_sd configuration value cost_upper configuration value

D

dilution configuration value

directed_selection configuration value

E

exp_id configuration value

F

f_coalescence configuration value food configuration value fs configuration value

function_lograte configuration value fw configuration value

G

g configuration value

g0 configuration value

I

input_csv configuration value invader_index configuration value

invader_sampling configuration value invader_strength configuration value

K

knock_in configuration value knock_in_threshold configuration value

knock_out configuration value

L

l configuration value lognormal_mean configuration value

lognormal_sd configuration value

M

m configuration value metacommunity_sampling configuration value migration configuration value

monoculture configuration value muc configuration value

N

n configuration value n_inoc configuration value n_migration configuration value n_propagation configuration value

n_transfer configuration value n_transfer_selection configuration value n_wells configuration value nreg configuration value

O

output_dir configuration value

overwrite_plate configuration value

P

params configuration value params_algorithm configuration value params_simulation configuration value passage_overwrite_plate configuration value phi_distribution configuration value phi_lower configuration value

phi_mean configuration value phi_sd configuration value phi_upper configuration value plate configuration value power_alpha configuration value protocol configuration value

Q

q configuration value

R

r configuration value R0_food configuration value r_percent configuration value r_type configuration value regulation configuration value resource_shift configuration value

response configuration value rf configuration value rich_medium configuration value rn configuration value row_number configuration value ruggedness configuration value

S

s_gen configuration value s_migration configuration value sampling configuration value save_composition configuration value save_function configuration value save_plate configuration value scale configuration value seed configuration value

selected_function configuration value sf configuration value sigc configuration value sigma_max configuration value sn configuration value sparsity configuration value supply configuration value

T

target_resource configuration value

tau configuration value

W

w configuration value